PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P03700_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 326aa MW: 36020 Da PI: 7.674

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P03700_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.7	5e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++l++ GSMUA_Achr4P03700_001 4 SCNGCRVLRKGCSDDCSIRPCLrwiksPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLLSG 91 6************************************************************************************* PP DUF260 84 qqqleqlkaelallke 99 ++ql q+++e++l ++ GSMUA_Achr4P03700_001 92 SWQLTQAAVEAVLKGA 107 *******9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.53	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLRWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLLS GSWQLTQAAV EAVLKGAPIV QIPSETAAST 120 PTPPLKASDI RHISKDPGAG GCARAAAELH KESMSSADIA EASSHVSQGE PDRAEAEEDD 180 EVGLELTLGS GPFSRSHRDE ARRVHDPDAC TTDLGLASCE EHIFVINQEK HLELKKREKD 240 DVLILKVTIQ NISSQKKFAL FFHPYRGIKR KWVYNDLELP SYQTRISWVD AAPELCQPQP 300 YPKTVTIFVI TCSRRRTGNR TVESFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394707.1	1e-121	PREDICTED: LOB domain-containing protein 41-like
TrEMBL	M0SKT7	0.0	M0SKT7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P03700_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-76	LOB domain-containing protein 41