PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P03680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 308aa    MW: 35052.9 Da    PI: 7.9737
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P03680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.41.8e-29168222256
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             ++ W++eLH+rF++a+eqLGG + AtPk i++lmkv+gLt+++vkSHLQkYRl+
  GSMUA_Achr4P03680_001 168 VKRYWSEELHKRFLHALEQLGGCHAATPKLIRKLMKVDGLTNDEVKSHLQKYRLH 222
                            6889*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.438164224IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-26165225IPR009057Homeodomain-like
SuperFamilySSF466891.7E-16166225IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24167222IPR006447Myb domain, plants
PfamPF002492.1E-8170220IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDRIEYARRF GELIVALDEE RRKMEAFHRE LPLCLHLINQ TIESYKQLMV SAETLSHELA  60
VKEFIPLRPR SVSSEDDTIH HQEWIRSTQL VAQEQDPLPK TVHPQKPIAI KAKMTWGDAQ  120
YLDKEEEIAP SESLACQDTE VASGEEGNGD GGKKKKKKKE RSQPERKVKR YWSEELHKRF  180
LHALEQLGGC HAATPKLIRK LMKVDGLTND EVKSHLQKYR LHARRSCPVE EISTSSNIQF  240
VVVRGIWIPT PDCAILTSTD AAAHAAPVIG VSETGRYADV SPLPSPLMIL DRSYQQTDKH  300
SKGRNPRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394712.10.0PREDICTED: myb family transcription factor EFM-like isoform X1
TrEMBLM0SKT50.0M0SKT5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P03680_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-51G2-like family protein