PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 270aa MW: 29748.8 Da PI: 10.0707

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P03660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.3e-31	203	261	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++ +tYegeHnh GSMUA_Achr4P03660_001 203 ADDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCVEDPTMLMVTYEGEHNHA 261 69**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.3E-19	155	200	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.8E-34	190	262	IPR003657	WRKY domain
PROSITE profile	PS50811	29.918	197	260	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-27	200	261	IPR003657	WRKY domain
SMART	SM00774	2.7E-38	202	262	IPR003657	WRKY domain
Pfam	PF03106	5.7E-27	204	260	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEGVEEANRA AVESCYRVLS LLSETQDRAL AYKDLMADTG KAVSRFNKVI SMLSNGVGHA 60 RPRRLHDPQQ LHFNHGIFLD SPAVSRADQS PLAMCGRSNS GMNLKFDNSS CAATVSSSRS 120 FLSSLSMDGS MDGKAFNLIG GSQSSNPMNW QLHNRRRCTG GGEDGNGKCA RTGRCHCSKK 180 RKLRVKRTIK VPAISNKLAD IPADDYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV 240 ERCVEDPTML MVTYEGEHNH AKLATQSAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-21	195	260	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394715.1	1e-123	PREDICTED: protein WRKY1-like
Swissprot	Q93WU6	4e-86	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	M0SKT3	0.0	M0SKT3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P03660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-76	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]