PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P03160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 327aa    MW: 35889.6 Da    PI: 9.3449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P03160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11156202455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k L+
  GSMUA_Achr4P03160_001 156 EHIIAERKRREKLTQRFIALSAVVPGL-----KKMDKASVLGDAINYLKRLE 202
                            699************************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16156213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-9156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-11157206No hitNo description
SMARTSM003532.8E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEAEAPAAAG GWYSDVGMNG GFFHQWGFTE QFTAAQFAAA LGQDFQRSLS SASHNSFPRD  60
QRPKRPLEAS SWSSCTTEQN SCLVPNASSP TILSFGNPDS SIDQNDVYGG LVGVVKPKRE  120
MDALHHHGSK RSYGAMAEQR SKAVSNGTRS TYHNKEHIIA ERKRREKLTQ RFIALSAVVP  180
GLKKMDKASV LGDAINYLKR LEEKVKMLED QAAKRTVESA VLVKRSRLRV DVDSSSRDES  240
LDGLPQIEAK MSGKTVLVKI HCDNRKGLLV KVLSEIEKLH LSVANTSAIS FVGSSLDITV  300
MAQVEEGFDM TVKDVVTQLS SAFRQLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14157205957Transcription factor MYC2
5gnj_B6e-14157205957Transcription factor MYC2
5gnj_E6e-14157205957Transcription factor MYC2
5gnj_F6e-14157205957Transcription factor MYC2
5gnj_G6e-14157205957Transcription factor MYC2
5gnj_I6e-14157205957Transcription factor MYC2
5gnj_M6e-14157205957Transcription factor MYC2
5gnj_N6e-14157205957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRE
2161166RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394784.10.0PREDICTED: transcription factor bHLH18
TrEMBLM0SKN30.0M0SKN3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P03160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-52bHLH family protein