PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P01930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 289aa    MW: 32626.3 Da    PI: 8.3596
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P01930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30153211259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+rsaed +v++ tYegeHnh+
  GSMUA_Achr4P01930_001 153 RDGYQWRKYGQKVTKDNPSPRAYFRCSFApSCPVKKKVQRSAEDSSVLIATYEGEHNHD 211
                            7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-30142213IPR003657WRKY domain
PROSITE profilePS5081127.841147213IPR003657WRKY domain
SuperFamilySSF1182905.1E-26150213IPR003657WRKY domain
SMARTSM007741.0E-35152212IPR003657WRKY domain
PfamPF031062.8E-25154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRQTLRLFYK FIAPLFLTDS SPSLQDQCKL LYISSCFILL LVPLILAFEP LMDSEWINPS  60
LSLDLSIGRS PDQASNGDLE AKLNELSEEN KRLNEMVKAM YSNHTALHHQ LMDLTNSVPP  120
AKKRKRMRMS ANMTSIYTTS MRIDASSSRL VVRDGYQWRK YGQKVTKDNP SPRAYFRCSF  180
APSCPVKKKV QRSAEDSSVL IATYEGEHNH DPPTTENESL PCFVSLSSSD SAVALDLRPR  240
GFRSEVECVE FQRILAEKMV SSLTRDPSFA EALASAISGR MFQHLQAQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-231512131374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9505113e-55AM950511.1 Musa balbisiana microsatellite DNA, clone contig0043.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394937.20.0PREDICTED: WRKY transcription factor WRKY76-like
SwissprotQ6IEK52e-55WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLM0SKB00.0M0SKB0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P01930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-53WRKY DNA-binding protein 40