PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P01910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 449aa    MW: 45741.2 Da    PI: 6.3757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P01910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12249294555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  GSMUA_Achr4P01910_001 249 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 294
                            99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-16242301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-13242298No hitNo description
PROSITE profilePS5088817.39244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15246299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9249294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-14250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQPSNREMPG MASSLNGISH TSAAAAAHVA LRELQNGHGL QAPFDHAGGG VGHDDFLDQM  60
LSNLPSAWAE LGNPRPAWVP PSDAPTAGQR LFSAGRAGES AEEMQYDESL LLANRLRQHQ  120
ISGGSSPTGE ALMLQLSRSG QQQMLSGLLP LPLTLGSAGS ADSPNPTGGD GLYNGFGGSL  180
QLAESVNQQS FHHPQSAPMP GQNFGAAPPA AGAGQTPAAS TLASASAGGG SGPPRQRVRA  240
RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKAN  300
SSLPPFPLVL SMSRLGGAAA VAPLVADMAS EGQSGAGRDG ANGGAAGSSD SLTVTEHQVA  360
KMMEEDMGSA MQYLQGKGLC LMPISLASAI SSATAGHLGH GLVPGVLPPP NPSGDAPSSP  420
GVSALTAQST MAAEATKDGV AASKSLSSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126172e-38CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394942.20.0PREDICTED: transcription factor bHLH69-like
TrEMBLM0SKA80.0M0SKA8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P01910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-43LJRHL1-like 1