PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P01120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 326aa    MW: 35688.1 Da    PI: 8.2942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P01120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000722232611154
                            HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             R +++ ++++ L +l+ +      +K + a++L +A+ YI+ L
  GSMUA_Achr4P01120_001 223 VRKEKLGDRISALHQLVSPF-----GKTDTASVLLEAIGYIRFL 261
                            5778888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.795212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-10222278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-7222270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-5222266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNGGSHQISL VQRMMGGSPS LWTLNNLMPP SQEMSAVFAS SSTSSSPSSS SSLSSLVIPK  60
CSKPASFIPV IPCRENQDLP VSWSQLLLTY GGGLVEEEDK CTDTPYSAKR MENWKDQTLY  120
TSTNTHMVDV KREDAQTGHA YHYGKDQEAQ AARSSWSRAV PASSPRSCVT TSFSSNMLEF  180
FSDCKGQRKH HQFDHSAECN SNVGVALKKA RVQASSAQSL LKVRKEKLGD RISALHQLVS  240
PFGKTDTASV LLEAIGYIRF LHSQIEALSS PYLRSGSRNT TLSDADDEPK NLRSRGLCLV  300
PVSFILDVGN HNGADFWAHS FGMGFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395038.10.0PREDICTED: transcription factor bHLH133
TrEMBLM0SK290.0M0SK29_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P01120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-45bHLH family protein