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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
GSMUA_Achr4P00550_001 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family |
HD-ZIP |
| Protein Properties |
Length: 280aa MW: 31694.6 Da PI: 5.1402 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr4P00550_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.7 | 8.3e-18 | 95 | 147 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ ++ eLA+ lgL+ rqV +WFqNrRa++k
GSMUA_Achr4P00550_001 95 KKRLNLEQVRVLEKNFEIGNKLEPGRKMELARALGLQPRQVAIWFQNRRARWK 147
4568889*********************************************9 PP
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| 2 | HD-ZIP_I/II | 125 | 3.5e-40 | 93 | 183 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
ekk+rl+ eqv++LE++Fe +kLep rK+elar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+ene+L++++++L
GSMUA_Achr4P00550_001 93 EKKKRLNLEQVRVLEKNFEIGNKLEPGRKMELARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQLEAMKTENEALQAQNKKLL 180
69*************************************************************************************9 PP
HD-ZIP_I/II 89 eel 91
+e+
GSMUA_Achr4P00550_001 181 SEV 183
887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MTCNGMPPLF PANLLLQIPH DETSPPGFGG ERPYLASYPQ DLTLGLLSND CVGAASVETL 60
LGKRSVSFSR MEACEELNIE EDLSDDGSQP AGEKKKRLNL EQVRVLEKNF EIGNKLEPGR 120
KMELARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDVLKR QLEAMKTENE ALQAQNKKLL 180
SEVLALKGKE TSEPINLNKE TEGSCSFRSD NSSDINLDLS TSDPHKSRVF FPSYRPPPAK 240
TETPKEEHSS IQEESFCTMF CSTDDQSAFW AWSEQHNFHQ
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 141 | 149 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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