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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P00480_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 29082.7 Da PI: 7.3426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 4e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+ +vk++G+g+W++++ g+ R+ k+c++rw +yl GSMUA_Achr4P00480_001 13 KGPWTQEEDLVLASYVKEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.3e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+ l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l GSMUA_Achr4P00480_001 66 RGNFTDQEERLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 111 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.247 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.263 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-12 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 68 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042761 | Biological Process | very long-chain fatty acid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGRTPCCDKG VKKGPWTQEE DLVLASYVKE HGPGNWRAVP TNTGLMRCSK SCRLRWTNYL 60 RPGIKRGNFT DQEERLIVHL QALLGNRWAA IASYLPERTD NDIKNYWNTH LKKKLRRIQG 120 SGDGATSNGG LSRCPPVSKD QWERRSSGFS LTAPITTTYA SSTENISRLL QGWMKQSPAA 180 GADMVAGGDS TSTEGSATVA SNNGVSPVGL PDSAFKIETP TPEVSEPNLF LGENRAAMEA 240 PVFISLFETW LFDDSMPLDD TAELL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00386 | DAP | Transfer from AT3G28910 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009395129.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | B3VTV7 | 6e-88 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | M0SJW5 | 0.0 | M0SJW5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P00480_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-86 | myb domain protein 94 |
Publications ? help Back to Top | |||
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