PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P30620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 324aa    MW: 35728.4 Da    PI: 5.7335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P30620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13150196455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er+RR+++N++f  L  ++P +     kK +Ka++L  A++Y+k+L+
  GSMUA_Achr3P30620_001 150 DHIMAERKRREKLNQRFIALSAIVPGL-----KKTDKASVLGDAIKYLKQLE 196
                            599************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17150208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-17151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.23E-14151200No hitNo description
PfamPF000106.2E-11151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEPQAAGWYS DVGMDGSFFG QWEVMDELTA QEVEAALGQD LQQSISSESY DSFPSDQPPA  60
STGRPRGALK TRSWSSCTTE QQNSALVPTA SSPSILSFGN PESPTDRNNI YGCLGGVVKR  120
KKEMDVLLHH GSKRNYDAMV GQGTTYHNKD HIMAERKRRE KLNQRFIALS AIVPGLKKTD  180
KASVLGDAIK YLKQLEEKVK VLEEQAAKRT VESAVLVKKS QLRADDDSSS CDENFEVRQC  240
GDSLPEIEAK ISEKAILVKI HCENRKGVLV KALSEIEQLH LSVVSASVMP FGTYSLDMTV  300
MAQIEEGFDM NATDVVKKLS SAFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14150199857Transcription factor MYC2
5gnj_B1e-14150199857Transcription factor MYC2
5gnj_E1e-14150199857Transcription factor MYC2
5gnj_F1e-14150199857Transcription factor MYC2
5gnj_G1e-14150199857Transcription factor MYC2
5gnj_I1e-14150199857Transcription factor MYC2
5gnj_M1e-14150199857Transcription factor MYC2
5gnj_N1e-14150199857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159ERKRRE
2155160RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679619.10.0PREDICTED: transcription factor bHLH18-like isoform X1
TrEMBLM0SJ760.0M0SJ76_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P30620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-53bHLH family protein