PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P30530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 577aa    MW: 62044.6 Da    PI: 4.6638
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P30530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.88.9e-1141965772374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaal 81 
                             e Ll+cA+ ++++d  la + L +++e as++gdp++R+a+yf+eAL +rl++ + +  +  ++ +++++          ++ +  +
  GSMUA_Achr3P30530_001 196 LESLLDCAR-IADSDPDLAAKSLIHVRESASESGDPTERVAFYFAEALYRRLHGAQRKHHSYPSTAAAPPSCssssfdssPEDFTLCY 282
                            5789****9.8888**************************************995444333332222222222334555566677778 PP

                   GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLa 166
                            k++++++P+ kf+hltaNqaIlea+e++ r+Hi+Df+i+qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +p+ g   + +l +tg+rL+
  GSMUA_Achr3P30530_001 283 KALNDACPYSKFAHLTANQAILEATESAARIHIVDFGIMQGVQWAALLQALATRPSGKPsRVRISGIPAPALGaaAAASLAATGNRLR 370
                            99*****************************************************777769*********9999999*********** PP

                   GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                            +fA+ l+++fef++ + + +++l+ +++rv+p+E+laVn++lql +ll   ++++++ ++vL++ ksl P+vv++ e ea++n++ Fl
  GSMUA_Achr3P30530_001 371 DFAALLDLDFEFDP-ILTPISELSASTFRVDPEETLAVNFMLQLCHLL---GDSPEPVERVLRVAKSLGPRVVTLGEYEASLNRAAFL 454
                            **************.799******************************...555556669**************************** PP

                   GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                            erf  al yy+a+fdsl+  + r+s er+ vEr l+gr+i  vv    ++ rrer+e  ++Wr+ +e++GF++vpls++a++qaklll
  GSMUA_Achr3P30530_001 455 ERFRTALAYYAAVFDSLDPAMQRDSAERARVERLLFGRRILGVVGPGDEQiRRERMEANAEWRAVMEQCGFETVPLSNYAVSQAKLLL 542
                            *********************************************998888************************************* PP

                   GRAS 342 rkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                             +++ s  y++ ++   ++ l W drpL++vS+Wr
  GSMUA_Achr3P30530_001 543 WNYNySSKYTLSDSAPVFLsLAWGDRPLLTVSSWR 577
                            ****9999********9999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.318169555IPR005202Transcription factor GRAS
PfamPF035143.1E-111196577IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQLVA ASVNPFSTNP PPWGSSHQPQ QHMTDHFPFV IPDPATTFAD  60
PFAPDPVAGF AAPPGGGHLD HGPFRLSDFG SSASAVAAEF DSDEWMESLI GDSPAESSDL  120
MGDPWQGAAG GSGALFADAF PSCSTDFSPP SPPASASDLN HVLFSEHCEI APLAPVQHLH  180
QAAAAPESSV SSQPLLESLL DCARIADSDP DLAAKSLIHV RESASESGDP TERVAFYFAE  240
ALYRRLHGAQ RKHHSYPSTA AAPPSCSSSS FDSSPEDFTL CYKALNDACP YSKFAHLTAN  300
QAILEATESA ARIHIVDFGI MQGVQWAALL QALATRPSGK PSRVRISGIP APALGAAAAA  360
SLAATGNRLR DFAALLDLDF EFDPILTPIS ELSASTFRVD PEETLAVNFM LQLCHLLGDS  420
PEPVERVLRV AKSLGPRVVT LGEYEASLNR AAFLERFRTA LAYYAAVFDS LDPAMQRDSA  480
ERARVERLLF GRRILGVVGP GDEQIRRERM EANAEWRAVM EQCGFETVPL SNYAVSQAKL  540
LLWNYNYSSK YTLSDSAPVF LSLAWGDRPL LTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1651925771375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679028.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM0SJ670.0M0SJ67_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P30530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-157GRAS family protein