PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P29980_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

BES1

Protein Properties

Length: 299aa MW: 31865.7 Da PI: 8.2334

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P29980_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	213.3	6.1e-66	3	150	1	145
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl...eeaeaagss 85 +g+gr+ptwkErEnnkrRERrRRaia++i++GLRa Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e++++g s GSMUA_Achr3P29980_001 3 AGGGRQPTWKERENNKRRERRRRAIASQIFSGLRAMGNYKLPKHCDNNEVLKALCHEAGWIVEEDGTTYRKGCKPPpppPESAIGGPS 90 589*********************************************************************99987778888999 PP DUF822 86 asaspesslq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 + +sp++s++ +s+ ss+++spv+s +asp sssfpsps+ld++s++ +++llp+l++l++ GSMUA_Achr3P29980_001 91 TGISPCTSSHlLSPLSSSFPSPVPSHHASPLSSSFPSPSRLDNASVN-PSCLLPFLRNLTA 150 99****9*****************************996.89***999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-63	4	148	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MTAGGGRQPT WKERENNKRR ERRRRAIASQ IFSGLRAMGN YKLPKHCDNN EVLKALCHEA 60 GWIVEEDGTT YRKGCKPPPP PPESAIGGPS TGISPCTSSH LLSPLSSSFP SPVPSHHASP 120 LSSSFPSPSR LDNASVNPSC LLPFLRNLTA LPPLRISNSA PVTPPLSSPT ASHPPKIRAP 180 DWDQNAFGRP LFAASAPASP TRGRRHGHPA TIPECDESDA STVESCRWVS MQMTAPGSPT 240 FNLVNPAATT PDTAAGSAGG CTEFDFESGR VKPWEGERIH DVAVDDLELT LGVGNTASK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-25	7	79	372	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-25	7	79	372	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-25	7	79	372	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-25	7	79	372	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid biosynthetic genes. May act as transcriptional repressor by binding the brassinosteroid-response element (5'-CGTGCG-3') in the promoter of GRAS32 (AC Q9LWU9), another positive regulator of brassinosteroid signaling (By similarity). {ECO:0000250}.
UniProt	Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid (BR) biosynthetic genes (PubMed:17699623, PubMed:19220793). May act as transcriptional repressor by binding the brassinosteroid-response element (BREE) (5'-CGTG(T/C)G-3') in the promoter of DLT (AC Q9LWU9), another positive regulator of BR signaling (PubMed:19220793). Acts as transcriptional repressor of LIC, a negative regulator of BR signaling, by binding to the BRRE element of its promoter. BZR1 and LIC play opposite roles in BR signaling and regulation of leaf bending (PubMed:22570626). {ECO:0000269\|PubMed:17699623, ECO:0000269\|PubMed:19220793, ECO:0000269\|PubMed:22570626}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269\|PubMed:22570626}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252468	1e-51	AK252468.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf161n20, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394366.1	0.0	PREDICTED: protein BZR1 homolog 1-like
Swissprot	B8B7S5	1e-115	BZR1_ORYSI; Protein BZR1 homolog 1
Swissprot	Q7XI96	1e-115	BZR1_ORYSJ; Protein BZR1 homolog 1
TrEMBL	M0SJ14	0.0	M0SJ14_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P29980_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5474	34	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19350.3	4e-79	BES1 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Tong H, et al. DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice. Plant Cell, 2012. 24(6): p. 2562-77 [PMID:22685166]