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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P29760_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C3H | ||||||||
Protein Properties | Length: 623aa MW: 67346.6 Da PI: 6.7807 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 2e-07 | 272 | 292 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg GSMUA_Achr3P29760_001 272 PCPDFRK-GACRRGDMCEYAHG 292 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 3.53E-14 | 41 | 166 | No hit | No description |
SMART | SM00248 | 1900 | 44 | 74 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 1.71E-15 | 49 | 169 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-16 | 50 | 169 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.8E-9 | 52 | 158 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.751 | 91 | 166 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0085 | 91 | 121 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.407 | 126 | 161 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.42 | 126 | 158 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 271 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 272 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-5 | 272 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 300 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.737 | 302 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MCGGPGRLKS SASSSLSPSP TSQEEHQQRS LAAGMSRLTV EIDSFSLSLL ELAANNDVDA 60 LRLFLDRDPS AVDEVGLWYG RRKGSNRMVL EQRTPLMVAA TYGSLDVLKL ILSLPSVDVN 120 RVAGLDSTTA LHCAASGGSL EAVDAVKMLL AAGADPALVD ANGNRPADAI VVPPKLPDVK 180 TGLEQLLGRS TNASGGSDNH HHPLRKKEYP VDPSLPDIKN SIYSTDEFRM FSFKIRPCSR 240 AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPDFRKGA CRRGDMCEYA HGVFECWLHP 300 AQYRTRLCKD GTGCSRRVCF FAHTNEELRP LYVSTGSAVP SPRSSSAAME MAAAMGLMPG 360 SPSSVSAVMS PFTPPMSPSA NGIGHSSASW PQPNVPTLTL PASNLQSSRL RSSLSARDMP 420 VDDLSVISET KALTPSNLDD LFSSEIASSP RYNSDQGSIF SPSHRTAVFN QFQQQQSLLS 480 PINTNVFPPK ARERQQQSLR SLSSRDLGPI SSPIVGSPVN SSWSKWASPS GVPDWGVNSE 540 ELGRLRRSSS FELRGNGEEP DLSWVHSLVR ESPTEKVVSV ATAPTGPTGG AECLNSNVEM 600 DGHDQAAVLG AWLEQMQLDQ IVT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394397.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 24-like isoform X2 | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | M0SIZ2 | 0.0 | M0SIZ2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P29760_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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