PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P29730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 320aa    MW: 34790 Da    PI: 8.3235
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P29730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.28.7e-31150206158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVN+KQy++I++RRq Rak+e e+k   k rkpylheSRh hA+rR+Rg+gGrF
  GSMUA_Achr3P29730_001 150 EEPVYVNPKQYHGIIRRRQLRAKAELERKA-LKVRKPYLHESRHLHAMRRARGCGGRF 206
                            69***************************9.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-35148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.424149209IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-26151206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22152174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESRPEGTNI VDPGLQTALP DTISAQPWWS GTMFAAMSTS KQSSAGTEVG QSRLGGGMHG  60
TGDVSKETQS ADRKSDGNLQ PTSAATSMMH EYLAPHTQLE LGQSIACAMY PFTDPYFAGV  120
VAPYGTQAMV HPQIIGMPQS RMLLPLEMTE EPVYVNPKQY HGIIRRRQLR AKAELERKAL  180
KVRKPYLHES RHLHAMRRAR GCGGRFLNTK KTDEDAAKTD TKKGLNSGAF LSTQSTISSS  240
SEAIPSDCSG DTNPASTMQE RMSKSQTSFS RKDGYQDQSE SEISFLHLKS GDKAEDDDCS  300
GPRSGGILVN RPSSRAVAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-19150213265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394404.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
TrEMBLM0SIY90.0M0SIY9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-48nuclear factor Y, subunit A1