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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P29290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 16934 Da PI: 10.2894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.2 | 6.3e-21 | 15 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa+a+++a+++l+g GSMUA_Achr3P29290_001 15 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARSLRG 64 69*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.82E-26 | 15 | 71 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 15 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-31 | 15 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.247 | 15 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-34 | 15 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 15 | 72 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-10 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAAAAQGGGG GREAHFRGVR KRPWGRFAAE IRDPWKKTRK WLGTFDTAEE AARAYDEAAR 60 SLRGPKAKTN FGCPGDLGVP PSAAQVSWGA VTRWRSAADL SMGHTPAAAG GGSGYAGYRL 120 EVVEAAAREE QERKTVAAAE AGKEKPPFSF DLNLPAPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 8 | 78 | 7 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394455.1 | 1e-110 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
Swissprot | Q9FE67 | 2e-31 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | M0SIU5 | 1e-108 | M0SIU5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P29290_001 | 1e-109 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-22 | ERF domain protein 12 |
Publications ? help Back to Top | |||
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