PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P28340_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 440aa MW: 48436.7 Da PI: 5.3884 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.3e-17 | 146 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g GSMUA_Achr3P28340_001 146 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 195 78*******************......55************************998 PP | |||||||
2 | AP2 | 43 | 1.1e-13 | 240 | 290 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g GSMUA_Achr3P28340_001 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKHVYLGLFDTEIEAARAYDKAAIKCNG 290 89********.7******5553..2.26**********99**********98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.33E-15 | 146 | 204 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-9 | 146 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 147 | 203 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 147 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-31 | 147 | 209 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.02E-11 | 147 | 203 | No hit | No description |
SuperFamily | SSF54171 | 3.73E-17 | 240 | 299 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.05E-23 | 240 | 298 | No hit | No description |
Pfam | PF00847 | 2.8E-9 | 240 | 290 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-16 | 241 | 298 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-29 | 241 | 304 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.633 | 241 | 298 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-6 | 242 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-6 | 280 | 300 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEGVWDLNDA ASGAQDGSSP MASVDIGYRG DVVENHGFGS SAVVVEASEE REDDGVAGRI 60 FGFSFSGRCG ESPSAGSKLA VVTQQLVAFG DAEGAGAGGS CSAPQPRGHL IEDGIWQSSE 120 PVGAGMATEA PPPLKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAY 180 AAARAYDRAA IKFRGMDADI NFRLDDYEED IKQASMGNLN KEEFVQVIRR QSTGFPRGSS 240 KYRGVTLHKC GRWEARMGQF LGKKHVYLGL FDTEIEAARA YDKAAIKCNG TDAMTNFDPK 300 IYEDELGIQT NHVEHNLDLS LGRSGSGSKR NKLEIMDDEG SNVVDQQLPM AFESEWNRDT 360 RLKRERERER ERERDRDREE GACMHVAFPA CTTPLPPSDA ELSGVHSEGR QSHLDSDRDT 420 ACCVGTDSCS LHLLIMRGFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 367 | 377 | RERERERDRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396264.1 | 1e-157 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | P47927 | 2e-99 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | M0SIK0 | 0.0 | M0SIK0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P28340_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-90 | AP2 family protein |