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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P27340_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20228.2 Da PI: 7.659 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC++dC++apyf ++q p++fa++h++FGasnv+kll+++p ++r +a+++++yeA+ar++dPvyG+vg+i++lqqq+ GSMUA_Achr3P27340_001 8 PCGACKFLRRKCTSDCIFAPYFGSDQsPAQFAAIHRVFGASNVSKLLAQVPVHDRCEAVATIAYEAQARIKDPVYGCVGHIFALQQQV 95 7*********************999989************************************************************ PP DUF260 88 eqlkaelallkeel 101 + l+a++ ++k++l GSMUA_Achr3P27340_001 96 AVLQAQVMQVKAQL 109 *******9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.622 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-40 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MATGAGSPCG ACKFLRRKCT SDCIFAPYFG SDQSPAQFAA IHRVFGASNV SKLLAQVPVH 60 DRCEAVATIA YEAQARIKDP VYGCVGHIFA LQQQVAVLQA QVMQVKAQLA YRAALSRVLE 120 DQQCQENFSV FLQSDSEYGA DGVLLMQQMG CREDVSAQEF CRKRTPHYEF GELQAMAQRM 180 MRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-40 | 4 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-40 | 4 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392816.1 | 1e-133 | PREDICTED: LOB domain-containing protein 16-like isoform X1 | ||||
Swissprot | Q9SLB7 | 7e-61 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | M0SIA0 | 1e-131 | M0SIA0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P27340_001 | 1e-132 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10599 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 1e-50 | lateral organ boundaries-domain 16 |