PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P25290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 123aa    MW: 14077.4 Da    PI: 8.5052
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P25290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY53.31.2e-16154154
                  YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54
                           +d++s +e++Cy++C++Cnt+lav vP   l+  vtv CGhC +l  +n +   
  GSMUA_Achr3P25290_001  1 MDLVSPAEHLCYIRCTYCNTLLAVGVPRRWLMDSVTVHCGHCNHLSFLNPRDVI 54
                           578999************************************999777765555 PP
2YABBY714.3e-2271112121162
                  YABBY 121 krqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                            k+ r+Psayn f++eeiqrika+ Pdi hreafs+aaknWa 
  GSMUA_Achr3P25290_001  71 KKHRAPSAYNHFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 112
                            889*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.9E-16661IPR006780YABBY protein
SuperFamilySSF470951.57E-768114IPR009071High mobility group box domain
CDDcd013908.16E-770115No hitNo description
PfamPF046909.0E-2271113IPR006780YABBY protein
Gene3DG3DSA:1.10.30.107.3E-672115IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MDLVSPAEHL CYIRCTYCNT LLAVGVPRRW LMDSVTVHCG HCNHLSFLNP RDVIQCLCPA  60
HDLPWICNLP KKHRAPSAYN HFMREEIQRI KAAKPDIPHR EAFSMAAKNW AKCDPRNSAN  120
VSL
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393989.12e-75PREDICTED: protein DROOPING LEAF-like
SwissprotQ76EJ02e-53YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM0SHP51e-86M0SHP5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P25290_0012e-87(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-37YABBY family protein