PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Nin-like

Protein Properties

Length: 1228aa MW: 135084 Da PI: 6.691

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P25240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.6	1.4e-24	870	938	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg.................vclTvLKriCRqyGIkRWPhRkiksl 52 aek isle+l++yFs+++kdAAk+Lg c+T++KriCR++GI+RWP+Rki+++ GSMUA_Achr3P25240_001 870 AEKMISLEVLQQYFSGSLKDAAKSLGgnthgsvvatvvhswvaFCPTTMKRICRHHGISRWPSRKINKV 938 5899************************************99*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01190	6.9E-15	35	123	No hit	No description
PROSITE profile	PS51519	14.254	860	958	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-23	874	938	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-22	1073	1164	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-24	1078	1159	No hit	No description
SMART	SM00666	2.1E-25	1078	1160	IPR000270	PB1 domain
PROSITE profile	PS51745	21.636	1078	1160	IPR000270	PB1 domain
Pfam	PF00564	5.6E-16	1079	1159	IPR000270	PB1 domain
CDD	cd06407	2.52E-36	1079	1159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1228 aa Download sequence Send to blast
MAARAHCSLA LSLLCIFLCS SASGGAREQL PSALVVGTVF CDTCFRQELA ESSYFISGAS 60 VAVECGDAAN QLGYRKVATT DRRGVFGVRL PPRISRNLGL VEACSVKLLR SNEPFCAVAA 120 SATTAGLRLQ SRRNGVRVYS AGFFSFKLLN QPELCHQKPQ LDQAAFFLPS PPSFGGVPVP 180 ANPLFGLRVW AACDPHHKSM SSMDGVEASG SHEGTCTMAP PCWHRSMPPP RAVVILSDGC 240 TRRAVPVPPV LPYLIRGVTP RWVRRPPVLL SQPHRGAPLL RWDHRPRSTD PLLPMSDSGG 300 RHSPLPPVSA ALLDIELDVD GSPWPFDLSS FVASPFSPFF LSSSSCPPPP SSLSFQLPPS 360 PLWILEDRAP EIPGALAECS RFLDGEIPPH LDLTCSPDTT IAKAYVLDSK ARQVQIPVPE 420 ENCGSSCVIK ERMTQALRYF KESTDQQALV QVWAPVKNGS RCVLTTSGQP FILDPQSTKL 480 LQYRTVSLMY IFSVDEDDDA DMGLPGRVFT KRMPEWTPNV QYYSSKEYQR LNHALLHNVQ 540 GTLALPVFEP SGHSCIGVVE IVMTSQKVNY AYEVDKVCKA LEAVNLKSSE ILDHPNVVVS 600 FYHSVTIAND GRQAALAEIL EILTVVCEAE KLPLAQTWVP CRHRTVLAHG GGLKKICSSF 660 DGSCAGQVCM STTDVAFYII DAHLWGFREA CVEHHLQKGQ GVAGRAFALR RACFSRDITE 720 YCKSDYPLVH YARMFDLAGC LAICLQSIHS GDDDYILEFF LPAECKSSAE QQSLLNSISA 780 LLIQCFQSLK VITGVEFQEG ISLQLVDLVT DDNYESIPKH LSSPCDDTHK SPETNIYEAE 840 DNDDSRNEGN ATSDLDKQQV ATDSNRRGKA EKMISLEVLQ QYFSGSLKDA AKSLGGNTHG 900 SVVATVVHSW VAFCPTTMKR ICRHHGISRW PSRKINKVNR SLSKLKHVIE SVQGAGALDL 960 ASLACPLPSR GSEDQRNKSV SLQVHVEERV HLQVEAGRDS HCSTGSSSEG SMDDTPTSQG 1020 SCQGNPPQLP VGLLIKDSAS SKDLQNLCTF AAEASQDERG MAVTQNTLHP WEMQENRTVI 1080 IKASYKEDII RFRLPHSAGV LAVKDEISKR LKLEVGTFDI KYLDDDHEWV MLTCDSDLEE 1140 CIEISRLSGA HIIRLSVHDI MTHHGSSCGS SEFDHHSYVP RQFSMDAANL LFWPTFCFVV 1200 KLFVSCRHNC RFFDMATVSV YNVRKLSL

Sequence ? help Back to Top

Protein Sequence Length: 1228 aa Download sequence Send to blast

MAARAHCSLA LSLLCIFLCS SASGGAREQL PSALVVGTVF CDTCFRQELA ESSYFISGAS  60
VAVECGDAAN QLGYRKVATT DRRGVFGVRL PPRISRNLGL VEACSVKLLR SNEPFCAVAA  120
SATTAGLRLQ SRRNGVRVYS AGFFSFKLLN QPELCHQKPQ LDQAAFFLPS PPSFGGVPVP  180
ANPLFGLRVW AACDPHHKSM SSMDGVEASG SHEGTCTMAP PCWHRSMPPP RAVVILSDGC  240
TRRAVPVPPV LPYLIRGVTP RWVRRPPVLL SQPHRGAPLL RWDHRPRSTD PLLPMSDSGG  300
RHSPLPPVSA ALLDIELDVD GSPWPFDLSS FVASPFSPFF LSSSSCPPPP SSLSFQLPPS  360
PLWILEDRAP EIPGALAECS RFLDGEIPPH LDLTCSPDTT IAKAYVLDSK ARQVQIPVPE  420
ENCGSSCVIK ERMTQALRYF KESTDQQALV QVWAPVKNGS RCVLTTSGQP FILDPQSTKL  480
LQYRTVSLMY IFSVDEDDDA DMGLPGRVFT KRMPEWTPNV QYYSSKEYQR LNHALLHNVQ  540
GTLALPVFEP SGHSCIGVVE IVMTSQKVNY AYEVDKVCKA LEAVNLKSSE ILDHPNVVVS  600
FYHSVTIAND GRQAALAEIL EILTVVCEAE KLPLAQTWVP CRHRTVLAHG GGLKKICSSF  660
DGSCAGQVCM STTDVAFYII DAHLWGFREA CVEHHLQKGQ GVAGRAFALR RACFSRDITE  720
YCKSDYPLVH YARMFDLAGC LAICLQSIHS GDDDYILEFF LPAECKSSAE QQSLLNSISA  780
LLIQCFQSLK VITGVEFQEG ISLQLVDLVT DDNYESIPKH LSSPCDDTHK SPETNIYEAE  840
DNDDSRNEGN ATSDLDKQQV ATDSNRRGKA EKMISLEVLQ QYFSGSLKDA AKSLGGNTHG  900
SVVATVVHSW VAFCPTTMKR ICRHHGISRW PSRKINKVNR SLSKLKHVIE SVQGAGALDL  960
ASLACPLPSR GSEDQRNKSV SLQVHVEERV HLQVEAGRDS HCSTGSSSEG SMDDTPTSQG  1020
SCQGNPPQLP VGLLIKDSAS SKDLQNLCTF AAEASQDERG MAVTQNTLHP WEMQENRTVI  1080
IKASYKEDII RFRLPHSAGV LAVKDEISKR LKLEVGTFDI KYLDDDHEWV MLTCDSDLEE  1140
CIEISRLSGA HIIRLSVHDI MTHHGSSCGS SEFDHHSYVP RQFSMDAANL LFWPTFCFVV  1200
KLFVSCRHNC RFFDMATVSV YNVRKLSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393072.1	0.0	PREDICTED: protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	M0SHP0	0.0	M0SHP0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P25240_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7