 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSMUA_Achr3P23710_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
| Family |
ERF |
| Protein Properties |
Length: 202aa MW: 21630.6 Da PI: 8.9913 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr3P23710_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 64.2 | 2.8e-20 | 22 | 70 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++GVr ++ +gr++AeIrdp k+ r++lg+f+taeeAa+a++aa+++++g
GSMUA_Achr3P23710_001 22 FRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAALQFRG 70
8*******.**********83...36************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MAPRTKGGDA GEGGGNLQVI RFRGVRKRPW GRYAAEIRDP AKKSRVWLGT FDTAEEAARA 60
YDAAALQFRG PKAKTNFPYP DPRHFPAVFV GAGSGSAASS PSSSTVESEK AVAVTGFKTV 120
AMSAYGGAHS ESASSLDMSY SLSPVVMAAP GRRLPFDVDL NLPPPPEGDP TQCCFKSTIC 180
VFDVQLKFFC HLFNLINCFM PS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC108523 | 1e-50 | AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence. |
| GenBank | AK111755 | 1e-50 | AK111755.1 Oryza sativa Japonica Group cDNA clone:J023061G02, full insert sequence. |
| GenBank | AP014961 | 1e-50 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | AY576527 | 1e-50 | AY576527.1 Oryza sativa ethylene-responsive element binding factor (EREBP) mRNA, complete cds. |
| GenBank | CP012613 | 1e-50 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
| GenBank | CT832482 | 1e-50 | CT832482.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA010C22, full insert sequence. |
| GenBank | CT841651 | 1e-50 | CT841651.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C107P12, full insert sequence. |
| GenBank | EU847518 | 1e-50 | EU847518.1 Oryza sativa Japonica Group clone OsEP2 AP2/ERF domain protein mRNA, complete cds. |
