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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P23290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 820aa MW: 91173.3 Da PI: 6.2776 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.3e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F GSMUA_Achr3P23290_001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIAMDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLF 214 99*****************************9777666.49*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ +l+++++r+ GSMUA_Achr3P23290_001 215 I--WNDNNQLLLGIRRA 229 *..7777778***9997 PP | |||||||
2 | Auxin_resp | 119.5 | 2.7e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpv+WpnS+Wrs+k GSMUA_Achr3P23290_001 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVHWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-47 | 113 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 120 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-22 | 127 | 228 | No hit | No description |
SMART | SM01019 | 1.1E-25 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-23 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-34 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-8 | 677 | 772 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.44E-7 | 682 | 761 | No hit | No description |
PROSITE profile | PS51745 | 22.7 | 687 | 771 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MRLSSSGLGN QQQEDTEEQR CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN 60 KEIDSLPSYR SLPPQLVCQL HNVTMHADVE SDEVYAQMTL QPLNPEEQKE PYLPTELGTA 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA MDLHGNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRISVGMRFR 300 MLFETEESSV RRYMGTITGI GDLDPVHWPN SHWRSVKVGW DESTAGERQP KVSLWEIEPL 360 TTFPMYPSPF PFRLKRPWPP GLPSLHGGKH DDFSLSSPVT WFRNGGNPGL QSLNFQGTGV 420 TPWTQPRFDT TILGLPPDMY LTMAADGIQE TRTMDPTKQV SSAMLQFQQI QNTASMYSPM 480 PPSQLLHHGQ SQLPQAFLQN IQLNQVQSQS QSEFFQHQLQ QQKFLSDHQQ VPSEASSRSF 540 SDSNTNCVST SDASPLHNIL SQFSPGEASH LLSVSEPNIS QRSVMLPPFP GRECAVNQDG 600 NMDARNQLLF GVNIDSSSLL MQNGMTSLCN VGRESDSTGM HYDASNFVGS SVHDFALSQA 660 LTGSGGLEET GFLQSSQNAD QLNQKGGTFV KVSKSGSFGR SLDITRFSSY NELRSELGRM 720 FGLEGQLEDP LRSGWQLVFV DRENDILLVG DDPWQEFVNN VWCIKILSPQ EVQQMGKHDV 780 NFLNSGSIKM LPTNGCDDYI SRQDSRNLST RVASMGSLEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-155 | 22 | 358 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009393314.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Refseq | XP_009393315.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Refseq | XP_009393316.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Refseq | XP_009393317.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | M0SH45 | 0.0 | M0SH45_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr3P23290_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Publications ? help Back to Top | |||
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