PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P22790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 392aa    MW: 43862.2 Da    PI: 7.4527
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P22790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.63e-25134177144
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                            d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e
  GSMUA_Achr3P22790_001 134 DPEPGRCRRTDGKKWRCSREVVVGQKYCERHVHRGRNRSRKHVE 177
                            79****************************************97 PP
2QLQ51.53e-1864100137
                    QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                            s+FT aQ+q+L+ Q+l+yKy++a++ vP eL+++i++
  GSMUA_Achr3P22790_001  64 SYFTLAQWQELELQALIYKYMIAGVSVPLELILPIKR 100
                            79*********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-964100IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-126598IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.12665100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.895134178IPR014977WRC domain
PfamPF088792.8E-21135177IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDSHRWSERQ QTDRQPCAGL PKLHLLDQQQ PPASALSLFA PEPCSGFHKT TTTIATPSLS  60
SFPSYFTLAQ WQELELQALI YKYMIAGVSV PLELILPIKR SLLSASPYYH HPELYQHLQP  120
SLMQGVSWGR CSVDPEPGRC RRTDGKKWRC SREVVVGQKY CERHVHRGRN RSRKHVEIPT  180
PTSLNGLKTG VSSPPPECAQ HNHFDLSGSR DILPLSQRTM KICRWLQCDS PFYFELLHLM  240
LLYFDSHCSL TLLHIELQDS KPEGYVLQRF FDEWPRSQQE SDDGLNYTSH PPSTTHLSMS  300
LPGNPSSDFS LKLSTGNNGE KQRPEEGSSN GGEDGRVVRP SNNWSGWGHH GEEASMGGPL  360
AEALRSAAST QSPTSVLHKP NGSVSETSSI SP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679471.10.0PREDICTED: growth-regulating factor 3
RefseqXP_018679472.10.0PREDICTED: growth-regulating factor 3
RefseqXP_018679473.10.0PREDICTED: growth-regulating factor 3
RefseqXP_018679474.10.0PREDICTED: growth-regulating factor 3
RefseqXP_018679475.10.0PREDICTED: growth-regulating factor 3
RefseqXP_018679476.10.0PREDICTED: growth-regulating factor 3
RefseqXP_018679477.10.0PREDICTED: growth-regulating factor 3
RefseqXP_018679478.10.0PREDICTED: growth-regulating factor 3
TrEMBLM0SGZ50.0M0SGZ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P22790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2546144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-55growth-regulating factor 4