PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P22700_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 506aa MW: 56076.6 Da PI: 6.909

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P22700_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.5	2.2e-11	197	231	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 kr rr+++NReAAr+sR+RKka++++Le+ L+ GSMUA_Achr3P22700_001 197 KRLRRLAQNREAARKSRLRKKAYVQQLETSRIRLQ 231 99**************************8655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-7	193	258	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-8	195	237	No hit	No description
PROSITE profile	PS50217	9.404	195	237	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.3E-9	197	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.07E-7	197	237	No hit	No description
PROSITE pattern	PS00036	0	200	215	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-27	278	353	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MVQEGEETWI ADHRVGETGL SDPRLSTHGI HGTTPAATKF FDQEEASYFG GLEEALMDGV 60 DGIRETEDSK SRLPTLQIFP SWPMRFQQSP RQGSLWSARS SASSSAQNTA SHPESDNPAS 120 RMASSDLCAD HKQQQEVMMT ILTSIAPDSL GLSSCSLSQV CFCFLMQMNS DMTKFIVSTR 180 KMTGSTARKD GKVLDPKRLR RLAQNREAAR KSRLRKKAYV QQLETSRIRL QQLEQDLHSA 240 RLQGVFLGVA GCANGSTSSS AAMFDMEYAR WLDENCKHMS GLQGAIQAHL PDGDLGVIVD 300 QCAVHYDELF RLKAIVVKSD VLHLLNGAWR TPAERCFLWM GGFRPSELLK MVVAQLDPLT 360 EQQFMGICNL QQSSQQAEEA LSQGLEQLHH SLADAIAGGF LSNGVADGSY MVIALGKLDN 420 LEGLVRQADK LRQQSLHQLR SLFTTIQAAK CFLAIGEYYA RLRALSSLWA SRPRESLIRN 480 DGVVSTSTDL QIVHQPLQNH FPYLPL

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MVQEGEETWI ADHRVGETGL SDPRLSTHGI HGTTPAATKF FDQEEASYFG GLEEALMDGV  60
DGIRETEDSK SRLPTLQIFP SWPMRFQQSP RQGSLWSARS SASSSAQNTA SHPESDNPAS  120
RMASSDLCAD HKQQQEVMMT ILTSIAPDSL GLSSCSLSQV CFCFLMQMNS DMTKFIVSTR  180
KMTGSTARKD GKVLDPKRLR RLAQNREAAR KSRLRKKAYV QQLETSRIRL QQLEQDLHSA  240
RLQGVFLGVA GCANGSTSSS AAMFDMEYAR WLDENCKHMS GLQGAIQAHL PDGDLGVIVD  300
QCAVHYDELF RLKAIVVKSD VLHLLNGAWR TPAERCFLWM GGFRPSELLK MVVAQLDPLT  360
EQQFMGICNL QQSSQQAEEA LSQGLEQLHH SLADAIAGGF LSNGVADGSY MVIALGKLDN  420
LEGLVRQADK LRQQSLHQLR SLFTTIQAAK CFLAIGEYYA RLRALSSLWA SRPRESLIRN  480
DGVVSTSTDL QIVHQPLQNH FPYLPL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678618.1	0.0	PREDICTED: transcription factor TGAL5-like isoform X1
Swissprot	Q5N7C7	1e-160	LG2_ORYSJ; Transcription factor LG2
TrEMBL	M0SGY6	0.0	M0SGY6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P22700_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-124	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]