PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P21460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 612aa    MW: 66423.9 Da    PI: 6.7742
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P21460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14226285155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  GSMUA_Achr3P21460_001 226 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 285
                            57*******************666664478446**********99*************98 PP
2AP246.96.7e-15328379155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr3P21460_001 328 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 379
                            57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-17226295IPR016177DNA-binding domain
CDDcd000181.76E-20226295No hitNo description
PfamPF008471.5E-11226285IPR001471AP2/ERF domain
SMARTSM003801.5E-28227299IPR001471AP2/ERF domain
PROSITE profilePS5103218.927227293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-15227294IPR001471AP2/ERF domain
PRINTSPR003672.9E-6228239IPR001471AP2/ERF domain
CDDcd000181.63E-23328389No hitNo description
SuperFamilySSF541719.15E-18328389IPR016177DNA-binding domain
PfamPF008478.4E-10328379IPR001471AP2/ERF domain
SMARTSM003801.5E-33329393IPR001471AP2/ERF domain
PROSITE profilePS5103219.045329387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-18329388IPR001471AP2/ERF domain
PRINTSPR003672.9E-6369389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MNNWLAFSLS PHELPSSQPH QSHSPSAAVS HFISGDDVST NCYDFSADST SEPPMGIPTL  60
RPDLSFCILE AFDRHHHHQT QDWNMKSFGG PSELSVLVGS SSNQNTMEED EPKLEDFLGG  120
NSISDHDRKV LPAALTSDDD GNGGSSSNSI GPSVIKTWLR NQSIPQQQAN DMAGGGGSSC  180
SSSAMVANSS SSDNKQKGTA GGADAQTGPM EAVPRKAVDT FGQRTSIYRG VTRHRWTGRY  240
EAHLWDNSCR REGQTRKGRQ VYLGGYDKED KAARAYDLAA LKYWGPTTTT NFPISNYENE  300
LEEMKHMTRQ EFIASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  360
STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESN MLPVGGAAKR LKDVGEHAEP  420
GAIGRRAEDS RLAPRFDGTG GYGASHHQGW PTTVAFHQPP PLQPPRWGAQ FPYGPTRGWC  480
KQEPSSVLHH SLVSVDASSL EHSTGSNSVV YGGSYHGGGY VMPMSTVVTD QSGAANQAGC  540
GNLIDEEGTA DPYSSSRNAY YLAHQLSSGN AKAREYEQNN AWMHAPALAM ASRSNGMAAD  600
HGAPPFTVWN DA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393529.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLM0SGL20.0M0SGL2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P21460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-132AP2 family protein