PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P21090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 373aa    MW: 40330.1 Da    PI: 8.6687
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P21090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.6e-31186241156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+p+LH+rF++a++qLGGs+ AtPk+i++lmkv+gLt++++kSHLQkYRl+
  GSMUA_Achr3P21090_001 186 KTRRCWSPDLHRRFLNALQQLGGSHAATPKQIRDLMKVDGLTNDEIKSHLQKYRLH 241
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.341183243IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-28184244IPR009057Homeodomain-like
SuperFamilySSF466897.77E-17184244IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-27186241IPR006447Myb domain, plants
PfamPF002499.3E-7188239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDLLDRVQSC HDYIRALEEE RKKIEVFQRE LPLCLKLVTH AIESVRQQMS DGERVSNGPV  60
LEEFIPLKPS FKSPSSGAVA AAIGSDRKPD WLRSVQLWNQ EPDTSLKEPP KKPIAVSAKR  120
IGGAFQPFER EKLVVPPPAS RAVAASSTNS AGGRGEGGGC GDSDGSSSGG EKEEKEKEGQ  180
FQSHRKTRRC WSPDLHRRFL NALQQLGGSH AATPKQIRDL MKVDGLTNDE IKSHLQKYRL  240
HTRRPSPAVQ SSSHPAPQFV LLVPPPDYAA AAAVAAAAQP GNGACAPTNG IYAPVASLPS  300
DPRFQQQLQT KKQYQRSCSG GEDSTGGDDD DATNTESLAT SASSQTTTAS PPCKLRSGTD  360
SVEQVLSRSR FRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158GGRGEGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393569.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ6Z8698e-81NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLM0SGH50.0M0SGH5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P21090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.15e-75G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]