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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P21060_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 34199.1 Da PI: 6.3113 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.5e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++ +G g+W++ a++ g++Rt+k+c++rw++yl GSMUA_Achr3P21060_001 18 RGPWTLEEDTLLMHYITCHGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 65 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 1e-16 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ GSMUA_Achr3P21060_001 71 RGNLSPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 114 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.619 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-30 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.09E-10 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.583 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-24 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.06E-12 | 75 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSDKRGSSGK HEEMELRRGP WTLEEDTLLM HYITCHGEGR WNLLAKCSGL KRTGKSCRLR 60 WLNYLKPDVK RGNLSPEEQL LILELHSKWG NRWSRIAQHL PGRTDNEIKN YWRTRVQKQA 120 RQLKVDPNSS MFRDALQCYW TPRLREQIIG SSQTLRSVDA NANTTTATDE AHRVLQSCGS 180 YELPEPESRS LSTSSCSVVL SQLPVDLSDF PSGPSDELSG VTFDPFSSVC SINDFYDLDT 240 WDIAPVSASA PSHSASDHSN NVGDSLWSMD DLYDMSKTYE SAAETKVPFA DNSQVVKYIS 300 PSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 15 | 120 | 4 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00159 | DAP | Transfer from AT1G25340 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009394051.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | M0SGH2 | 0.0 | M0SGH2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P21060_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 6e-77 | myb domain protein 62 |