PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P21000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 254aa    MW: 28948.3 Da    PI: 9.844
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P21000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-1777124148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+W++eEd++l+d+v  +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr3P21000_001  77 RGAWSKEEDQKLIDYVGVHGEGCWRALPKAAGLLRCGKSCRLRWINYL 124
                            89******************************99************97 PP
2Myb_DNA-binding50.16.3e-16130175148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++ ++E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr3P21000_001 130 RGNFQEDEADLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 175
                            899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2368127IPR009057Homeodomain-like
PROSITE profilePS5129416.5972124IPR017930Myb domain
SuperFamilySSF466891.35E-2774171IPR009057Homeodomain-like
SMARTSM007173.8E-1376126IPR001005SANT/Myb domain
PfamPF002493.4E-1577124IPR001005SANT/Myb domain
CDDcd001674.92E-1079124No hitNo description
PROSITE profilePS5129425.518125179IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-25128179IPR009057Homeodomain-like
SMARTSM007172.0E-14129177IPR001005SANT/Myb domain
PfamPF002492.5E-14130175IPR001005SANT/Myb domain
CDDcd001671.06E-9135175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTAWAQREIY RSAWEHVPCV HPAPVLRTYL GKTRYLRSLS PATILRRHLR SWHLFLSPCL  60
CSTAMRSPCC DKQGTNRGAW SKEEDQKLID YVGVHGEGCW RALPKAAGLL RCGKSCRLRW  120
INYLRPDVKR GNFQEDEADL IIKLHALLGN RWSLIAGRLP GRTDNEVKNY WNSHLRKKLT  180
SMGIDPDNHR VARKNMSFWH LNSTVGDDRV RCAGSGSLEE NSSGLPDLNL DLTICIPSSV  240
MEKNTANPTL LLFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-277617926128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393580.11e-133PREDICTED: myb-related protein 308
SwissprotP813933e-75MYB08_ANTMA; Myb-related protein 308
TrEMBLM0SGG60.0M0SGG6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P21000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-73myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]