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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P19060_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 240aa MW: 25185.5 Da PI: 10.6452 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99 | 3.5e-31 | 27 | 78 | 4 | 56 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +rY+eCl+NhAa++Gg+a+DGCgEfmp+ gee + +alkCaACgCHRnFHRre GSMUA_Achr3P19060_001 27 ARYRECLRNHAAAMGGQAYDGCGEFMPA-GEEDSLDALKCAACGCHRNFHRRE 78 79*************************9.8888*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.1E-28 | 27 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.6E-29 | 28 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.752 | 29 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-17 | 32 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PRINTS | PR01217 | 1.3E-10 | 81 | 97 | No hit | No description |
PRINTS | PR01217 | 1.3E-10 | 104 | 116 | No hit | No description |
PRINTS | PR01217 | 1.3E-10 | 178 | 194 | No hit | No description |
PRINTS | PR01217 | 1.3E-10 | 195 | 212 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDLSVVPYTG GREEEAEGAG GGGGGGARYR ECLRNHAAAM GGQAYDGCGE FMPAGEEDSL 60 DALKCAACGC HRNFHRREGL SQPPPPQFPA FLPAPMPLPY HAMQPPPLAA ALPLPPRPPR 120 RPGPASGSAP GSRRSRRRRC RPSRRSWGGV SRSKTTSRST SSASRSASSG TSSRSGCTTT 180 RATSPRPHPP PPPPTPPPPT PPPATPPPPP PPPLPSTPNQ ILSYDIGFPP ILALITFHVW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0SFX2 | 1e-164 | M0SFX2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P19060_001 | 1e-165 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 1e-21 | homeobox protein 21 |