PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P18870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 346aa    MW: 37488.6 Da    PI: 4.9679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P18870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-112703101055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  GSMUA_Achr3P18870_001 270 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 310
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-14260325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-12265319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-12269314No hitNo description
PfamPF000104.3E-8270310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEPQGLVSEA SWSCFDPAMS VEESEVMAQL LGGSQSFAGD HDQQQQMLWS DHNADSYYCA  60
ATSYPDPYCW PQGNCSRSSS TDYYYFSDPH MVPAIGVSST PMSFSIGGER IDTPSFPVGA  120
HHQFGAAVCV TEEASGDEVV DSLAKPPPPP PAHASQAIKR RLHGGVIEVA ANTEEDDTQL  180
QSPKKKARAS APMPKKGKNA QSKKAQKSGG SCNEEESNGD MNPQSSCCYT SEDDSNGSQE  240
LKGAAASLNS NGKTRAGRGS ATDPQSLYAR KRRERINERL RILQTLVPNG TKVDISTMLE  300
EAVQYVKFLQ LQIKLLSSDD LWMYAPIAYN GMNLGIDLNI ASKSQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393839.20.0PREDICTED: transcription factor bHLH85-like isoform X1
RefseqXP_018678413.10.0PREDICTED: transcription factor bHLH85-like isoform X2
TrEMBLM0SFV30.0M0SFV3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P18870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-48bHLH family protein