PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P16700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 195aa    MW: 20409.8 Da    PI: 6.4858
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P16700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07446541
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                            C+ +e+  +   C+ ++  lC++C ++ H        H++v 
  GSMUA_Achr3P16700_001  4 QCDVCERAAAAVLCFADEAALCRSCDEKVHAAnkvagkHRRVL 46
                           7******99*********************6678888888775 PP
2zf-B_box279e-0967108338
               zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                             + C+ ++ek   +fC +++ llC++C  ++H        H+
  GSMUA_Achr3P16700_001  67 IPACDVCKEKAGFFFCLEDRALLCRQCDATTHAAkpcgssHQ 108
                            678*******9999******************6566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.655147IPR000315B-box-type zinc finger
CDDcd000211.62E-6347No hitNo description
PfamPF006438.0E-6445IPR000315B-box-type zinc finger
SMARTSM003363.9E-9447IPR000315B-box-type zinc finger
SMARTSM003362.3E-1065112IPR000315B-box-type zinc finger
PROSITE profilePS501199.41465112IPR000315B-box-type zinc finger
CDDcd000217.60E-768112No hitNo description
PfamPF006436.5E-668108IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKIQCDVCER AAAAVLCFAD EAALCRSCDE KVHAANKVAG KHRRVLLLPR GSSSPSPHPS  60
STSADNIPAC DVCKEKAGFF FCLEDRALLC RQCDATTHAA KPCGSSHQRF LITGVRVDDV  120
IDSSSSSGGR CKANSSGGSG IQSPSGSLAS TPTAAVGERL PGDPMGHDGW SWSELLDGVE  180
LERWYGIPDP GSSSS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392581.11e-140PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018678267.11e-140PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM27e-44BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM0SF861e-139M0SF86_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P16700_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-41light-regulated zinc finger protein 1