PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P16050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 373aa    MW: 40715.9 Da    PI: 8.6101
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P16050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-123054327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C+++++tGtCk+G++CkF+H++
  GSMUA_Achr3P16050_001 30 QPECQYYLKTGTCKFGSTCKFHHPK 54
                           799********************96 PP
2zf-CCCH32.61.4e-1076100327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            + +C ++ rtG+Ck+G++Ck++H++
  GSMUA_Achr3P16050_001  76 EQECAYYIRTGECKFGSTCKYHHPQ 100
                            568********************97 PP
3zf-CCCH38.22.4e-12233259127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+f+++tG Ck+G+ C+F+H++
  GSMUA_Achr3P16050_001 233 PGQPECQFYMKTGDCKFGAVCRFHHPR 259
                            5789*********************96 PP
4zf-CCCH38.32.2e-12279305127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++lC f++r+G+Ck+G++CkF H++
  GSMUA_Achr3P16050_001 279 PGEPLCVFYSRYGICKFGPNCKFDHPM 305
                            589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.9E-62754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6662755IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-103054IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-63156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-53354IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-473100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83173101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-674101IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-776100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596232260IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6232259IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9234259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6236262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5238260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953278306IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-8278305IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4283303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTCKFNHPQN RMLAIAAARI RGGYPERVGQ PECQYYLKTG TCKFGSTCKF HHPKEKAGIA  60
KQAQLNILGY PLRPNEQECA YYIRTGECKF GSTCKYHHPQ PSNTILALRG SPIYPSAHSP  120
TTPGQQSYPA GMTNWTLPRS SYISSPRWQA SSSYAQLILP QGVVQVPGWT SYSGQLGSSP  180
GSQQTAGVAQ FYSPSQQGET NIGAQGKFSS YRPGSVSMGL YAVPRENIFP ERPGQPECQF  240
YMKTGDCKFG AVCRFHHPRE RLIPTPNCVL NPLGLPLRPG EPLCVFYSRY GICKFGPNCK  300
FDHPMGPVTY GLSESSMADV PTVQHLLGSS LDPPTLTLPS EETANGSSGV SIRAPTSDSR  360
RATSVDENDE ADS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392477.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009392478.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009392479.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_018679638.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-176ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM0SF210.0M0SF21_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P16050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-119zinc finger protein 1