PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P15740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 276aa    MW: 31593.8 Da    PI: 10.4596
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P15740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.64.1e-33181102103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F+ k+y++++d++l++li+w +++nsf+v+d+++f++ +Lp++Fkh+nf+ F+RQLn+YgF+kv+ ++         weF+h+sF +g
  GSMUA_Achr3P15740_001  18 FVAKTYQMVSDQRLDSLIRWGNQNNSFLVVDPNDFSQLLLPSFFKHRNFSTFIRQLNTYGFRKVDPDR---------WEFAHESFLRG 96 
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            + +ll +i r++++
  GSMUA_Achr3P15740_001  97 QAHLLPSITRRRRK 110
                            **********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-4914107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.12E-3215107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3515107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-151841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.4E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-155668IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-156981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEEKSRGCHD YQEPVAPFVA KTYQMVSDQR LDSLIRWGNQ NNSFLVVDPN DFSQLLLPSF  60
FKHRNFSTFI RQLNTYGFRK VDPDRWEFAH ESFLRGQAHL LPSITRRRRK TQGVLHGSSS  120
RGRGGVDGEE ERLLLQELEK LQQQQRSLEE EVKAMSKRVQ ATERRPRQLM SFLVKVAEDP  180
KLLLQRLVRS KQQQQLSTEK KRRVFASPAT TLLPFDEVSA MLKPSRTEPK PLEVGGFDLS  240
ARQTSSQPEF GLSGTSSGTA SSTVAFPFTL LDQGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-211510726129Heat shock factor protein 1
5d5v_B4e-211510726129Heat shock factor protein 1
5d5v_D4e-211510726129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392455.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV524e-71HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLM0SEZ00.0M0SEZ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P15740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]