PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P14760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 778aa    MW: 86715.4 Da    PI: 7.0903
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P14760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK74.11.7e-23508591252
                 RWP-RK   2 ekeisledlskyFslpikdAAkeLg.................................vclTvLKriCRqyGIkRWPhRkiksl 52 
                            ek++sle+l+kyF++++kdAAk +g                                  c+T+LKriCRq+GI RWP+Rkik++
  GSMUA_Achr3P14760_001 508 EKTVSLEVLRKYFAGSLKDAAKGIGesdnykqiyelsmtlsfdvhinilmgcyiqgmiFCPTTLKRICRQHGITRWPSRKIKKV 591
                            799******************************************************99***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.185497611IPR003035RWP-RK domain
PfamPF020421.1E-20510591IPR003035RWP-RK domain
SuperFamilySSF542775.4E-22675761No hitNo description
Gene3DG3DSA:3.10.20.2403.7E-23677761No hitNo description
PfamPF005642.2E-17679761IPR000270PB1 domain
SMARTSM006661.2E-25679762IPR000270PB1 domain
PROSITE profilePS5174521.754679762IPR000270PB1 domain
CDDcd064071.86E-35680761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MEAVPQADTS LGRNLADGAA DLDLLDQLLS GDGWMEFPDC PDALQAGTPD SMSPFNSLSF  60
SPLFEVSNSR TSWWIQPRES NFSVKEKFMQ ALDYIKENQR EGDALVQLWV PVKRGGQLIL  120
TTYSQPFLLN RKCEKLVNYR EVSVNYQFST EENSGKALGL PGRVFLGGLP EWTPDVRLFS  180
SYEYPRVDYA QRLDIRGSIA LPVFDQGNRS CLGVVEVVMT TQKINYTYEL QNICSALQAV  240
DLRSSEVASV PRFKVSSGSY QAALPEILEV LKAVCRMHML PLAQTWIPCI QQGKKGIRHS  300
DENYGYCVST CDDVCCVNDP SMTGFHEACS EHHLLRGQGV AGRAFTTNQP CFVSDVTASS  360
KTEYPLSHYA KMFGLRGAVA IRLRSILTGN ADFVLEFFLP ANCILIEEQK RMLNSLSGTI  420
QQVCQTLRVV TSKELADEAM LQVSETIPNS WLAKSSSEAE PGQKCDTDTS LEAHKTGKHG  480
VERFSITTDR DHTEVATRTT EKRRRKTEKT VSLEVLRKYF AGSLKDAAKG IGESDNYKQI  540
YELSMTLSFD VHINILMGCY IQGMIFCPTT LKRICRQHGI TRWPSRKIKK VDHSLRKLQV  600
VIDSVHGADK AIQLNLDAKI IQPNLSSSHS SSSCSPTSTS SLSSSSGEKQ CNQSAEPRMK  660
QEHCSSGSLS PSDSNRSSWI RVKATYGAEK VRMRLHPAWG FEDLRQEILK RFNIGIEHSV  720
NLRYFDDESE WILLACDADL QECIHIYRLS GAQTINISVH PVASTLIRTS SCGTGLSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392335.10.0PREDICTED: protein NLP1-like
SwissprotQ9SFW80.0NLP5_ARATH; Protein NLP5
TrEMBLM0SEP20.0M0SEP2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P14760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein