PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P13990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 426aa    MW: 45628.3 Da    PI: 10.0964
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P13990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-057395123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C+ C+k F r  nL+ H r H
  GSMUA_Achr3P13990_001 73 FICEVCNKGFQREQNLQLHRRGH 95
                           89*******************88 PP
2zf-C2H212.80.00036149171123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC  C+k++  +s+ k H +t+
  GSMUA_Achr3P13990_001 149 WKCDRCSKRYAVQSDWKAHAKTC 171
                            58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-77295No hitNo description
PfamPF121712.0E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-7144169No hitNo description
SMARTSM00355230149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAAASSSVPL FGIREGGEQY NKPPPPPTNQ QSSSSAPIAP KKKKKKRNLP GNPNPDAEVI  60
ALSPKTLLAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKEAR RRVYLCPETT  120
CVHHDPSRAL GDLTGIKKHY CRKHGEKKWK CDRCSKRYAV QSDWKAHAKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESARLPSG MSAIGSHFEP AKLFDGNPMR NNNNIDVSCL  240
LASSVHNESA AAPLMSATAL LQKAAQMGVT SSGRCGSSFL TGFGSTYSSG SGGSKHANHR  300
DEFRSSGPGQ GSRTQVENEN HFQNLMFSLA NGSSGIFGGG NERETGLGGF GPGLCNLSSG  360
GMGGADGLTR DFLGVGGVMR SMGAGARQRG GEVGVAMAGA LDSETKSGHC SLPSTDGSLQ  420
SRRNNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35145209367Zinc finger protein JACKDAW
5b3h_F1e-35145209367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KKKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-149AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392215.11e-155PREDICTED: protein indeterminate-domain 2-like
TrEMBLM0SEG60.0M0SEG6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P13990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-111indeterminate(ID)-domain 5