PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P13920_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 285aa MW: 31873.8 Da PI: 6.5227

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P13920_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	130	174	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + + +G g+Wk Ia+++ ++Rt+ q+ s+ qky GSMUA_Achr3P13920_001 130 NWTEEEHRLFLMGLNVYGRGDWKNIAKYFVTTRTPTQVASHAQKY 174 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.064	5	55	IPR017877	Myb-like domain
SMART	SM00717	9.6	5	57	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.394	123	179	IPR017930	Myb domain
SuperFamily	SSF46689	7.59E-18	125	179	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-12	127	176	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-16	127	177	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-13	127	177	IPR001005	SANT/Myb domain
CDD	cd00167	2.57E-11	130	175	No hit	No description
Pfam	PF00249	2.0E-12	130	174	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSFSKNGDWT FLENNTFENA LAELNLDGPD WLEQLTEILP SKTIDQVRDH YIDLVMDIDL 60 IESGRYMEHQ YTDSEKNKMD GDLEFPLPAV HGSGTSSSEA MDQTAGVVLV PGGTRRLLRV 120 AEPASRKGVN WTEEEHRLFL MGLNVYGRGD WKNIAKYFVT TRTPTQVASH AQKYFNRMEH 180 ARKVGKRRPS IHDIRNITAP LRTEAQIMSI YDLVDRKKPF VVGHGYQLRP RASPPLLSSI 240 SAAAVEREAG AAPASSLDTG QPSLIPEQSN TMGTTDPTSW SKKSN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0SEF9	0.0	M0SEF9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P13920_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-42	MYB family protein