PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P10050_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 156aa MW: 17473.9 Da PI: 6.2344

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P10050_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142	1.9e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+C+kdC++apyfp+++p+kf +vh++FGasnv+k+l++lp ++r da+sslvyeA ar++dPvyG+vg i+ lq+q++ GSMUA_Achr3P10050_001 6 PCASCKLLRRRCTKDCIFAPYFPSDDPHKFSIVHRIFGASNVSKMLQELPVHQRADAVSSLVYEATARTKDPVYGCVGAISYLQNQVS 93 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 ql+ +la++++e GSMUA_Achr3P10050_001 94 QLQMQLAVAQTE 105 *****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.851	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MEGNSPCASC KLLRRRCTKD CIFAPYFPSD DPHKFSIVHR IFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA TARTKDPVYG CVGAISYLQN QVSQLQMQLA VAQTEILCAQ MQQEPPMAEQ 120 QVEAYDNNLT GMPQLMNNAS SSNLAQDQLK REFLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-49	4	115	9	123	LOB family transfactor Ramosa2.1
5ly0_B	7e-49	4	115	9	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391699.1	1e-115	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	9e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	M0SDC2	1e-114	M0SDC2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P10050_001	1e-115	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-70	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]