PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P08370_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 287aa MW: 33007.4 Da PI: 9.8056

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P08370_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.5e-19	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l ++v+ +G g+W++ ar+ g++Rt+k+c++rw++yl GSMUA_Achr3P08370_001 23 RGPWTADEDLILMNYVTAHGEGRWNSLARRAGLRRTGKSCRLRWLNYL 70 89********************************************97 PP
2	Myb_DNA-binding	54.6	2.5e-17	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ +lG++ W++Iar+++ gRt++++k++w++ GSMUA_Achr3P08370_001 76 RGNITPEEQLLILELHFRLGNR-WSKIARHLP-GRTDNEIKNYWRT 119 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.302	18	74	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-30	20	117	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-14	22	72	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-16	23	70	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-23	24	77	IPR009057	Homeodomain-like
CDD	cd00167	1.46E-10	25	70	No hit	No description
PROSITE profile	PS51294	18.678	75	125	IPR017930	Myb domain
SMART	SM00717	2.1E-15	75	123	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	76	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-23	78	124	IPR009057	Homeodomain-like
CDD	cd00167	1.02E-11	80	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEFQGRACGS ATPPSEEEME LRRGPWTADE DLILMNYVTA HGEGRWNSLA RRAGLRRTGK 60 SCRLRWLNYL RPDVRRGNIT PEEQLLILEL HFRLGNRWSK IARHLPGRTD NEIKNYWRTR 120 VQKHAKQLRC DARLSSPPAS ESVTESRGIQ GVGVDWMQGA QPPSPGGYAF SGLPDVDQSG 180 WGESLWSDKP YNLFHDVSNA HHSAAKGYSD CCRTQLYWLQ LASYMKNLLQ EPSQKSHLDL 240 NLRDHYRIVL TSLQALFKTK RGRYRCPRAL LCFCSAFTWQ QFSSRPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-26	20	123	24	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392050.1	9e-91	PREDICTED: transcription factor MYB108-like
TrEMBL	M0SCV4	0.0	M0SCV4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P08370_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01530.1	4e-65	myb domain protein 57