PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P07940_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 282aa MW: 31815.6 Da PI: 4.7468

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P07940_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed +lvd+++ +G g W+ +++ g++R++k+c++rw++yl GSMUA_Achr3P07940_001 14 RGAWSAREDNILVDYIRTHGEGKWRDLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.7	1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ GSMUA_Achr3P07940_001 67 RGNITQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.433	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.48E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.06E-9	16	61	No hit	No description
PROSITE profile	PS51294	25.63	62	116	IPR017930	Myb domain
SMART	SM00717	6.0E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-24	69	115	IPR009057	Homeodomain-like
CDD	cd00167	2.03E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGRRPCCSKE GLNRGAWSAR EDNILVDYIR THGEGKWRDL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TQDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKKTMPPL 120 CTKGSSKEKE EKKVGSSEEL KAAGEQLPAH VIQTKAVRCT KVYLPSPRDD PLTTGPSSEL 180 THGESPSSSV PRDADPASFL EDFDMDEFMS SFQEDGLLQL CVDEAHEDAN YAREDADDDS 240 LWFCDPMQMD LSDGNSCTES QVAAEVERLT YLIDCEEEAQ DK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391459.1	0.0	PREDICTED: transcription repressor MYB5-like
TrEMBL	M0SCR1	0.0	M0SCR1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P07940_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-63	myb domain protein 3