PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P07110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GeBP
Protein Properties Length: 316aa    MW: 34189.4 Da    PI: 7.2573
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P07110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57358.81.5e-18114204497
                 DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                            +++wse+De+ lL+G + f+++t++ p++  + af+  +k+s+  + + +q+  K++rLK Kf +  +        + +++hd+ i+e
  GSMUA_Achr3P07110_001 114 KKVWSEHDEVELLKGALAFRSRTDALPKQpTMAAFFASIKSSVGPHLTADQVGYKLKRLKSKFVHSASA----GPAAGATAHDRRIYE 197
                            789**********************999989*********************************99999....4557789******** PP

                 DUF573  91 lskkiWg 97 
                            ls  +W 
  GSMUA_Achr3P07110_001 198 LSTDVWA 204
                            ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-19114203IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPLSPPLCLT LIPNPSESMR SKRLASHSAN KASSSSSSSH SSATAADSLL PTTEDPPSTN  60
GGPDGRSAPQ TPPASKPLPE PYAAASPAAT SRRSERKRKP REFGGKSSPE IRQKKVWSEH  120
DEVELLKGAL AFRSRTDALP KQPTMAAFFA SIKSSVGPHL TADQVGYKLK RLKSKFVHSA  180
SAGPAAGATA HDRRIYELST DVWAEEVKHG DAEEDESGDV AAAADAEGEE EETGGDNDRF  240
PFIREAAAAY WKVNGRCMSG VLLEKGLKLI DPSKGTALEE KLRKQCETEM ELWMKRLDML  300
KEISELLLEA HKSSRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391369.10.0PREDICTED: probable transcription factor At4g00390
RefseqXP_018678455.10.0PREDICTED: probable transcription factor At4g00390
TrEMBLM0SCH80.0M0SCH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-08DNA-binding storekeeper protein-related transcriptional regulator