PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P06370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 495aa    MW: 54658.9 Da    PI: 8.5338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P06370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.00047218235219
                            HHHHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsa 19 
                            r +h++ E+rRR +iN++
  GSMUA_Achr3P06370_001 218 RSKHSATEQRRRTKINDR 235
                            889*************96 PP
2HLH26.31.3e-082472801855
                            HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            s+f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  GSMUA_Achr3P06370_001 247 SKFQILRELIPHS----DQKKDKASFLLEVIEYIRFLQ 280
                            79**********9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-21213304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.02216279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-13216306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-12218284No hitNo description
SMARTSM003534.0E-5222285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6247280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MIIRVVFTGK EVTQDFLSLC TKDYSSFQHQ DPRPPPAPGG FYLQTHDFLM PLVEKKERQQ  60
QEKEDSSRRN GEATAADNTT TERPPEHVLP GGIGTYSIRH VRGADAKRSR CGLALPGAAG  120
EGSKSEPGYY DSPRTYDAAV WSDGQWPYRS FGPRGSSVAT SAATRWHAGP ETKLLVEAAE  180
QCDDELFGKR EGSSSRKEWA IKVDGMGSCS DQRPNTPRSK HSATEQRRRT KINDRQVCGA  240
LLLAVFSKFQ ILRELIPHSD QKKDKASFLL EVIEYIRFLQ KKVQKYESAC PEWNQNNSKL  300
MPWINITKLP QNKSSQGLGD GSASPAYMFS EKFDETGISF AQNPAEPDES CTVSFKTIKS  360
AKDFANVDST ASRSPSQWLR LPVRADCGAS DSMLNEQGKV TIDEDTTNAS TKYSQGLLNT  420
LNQALQISGV NISQASISVE INLGKRAINR RLTAAATTSS AEVHEDPVST NQAIEHSMKG  480
SSSERPSQRP KRQNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391289.10.0PREDICTED: transcription factor BIM2-like isoform X1
TrEMBLM0SCA40.0M0SCA4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P06370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-44BES1-interacting Myc-like protein 2