PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P03840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 361aa    MW: 40566.1 Da    PI: 7.8181
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P03840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.2e-093454526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           +C f+++ G C+yG+rC++ H+
  GSMUA_Achr3P03840_001 34 ICTFYQK-GVCSYGSRCRYDHV 54
                           7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.563128IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.542956IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53153IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.901140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.093141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.85E-13195273No hitNo description
Gene3DG3DSA:3.30.40.104.4E-10204269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00129208268No hitNo description
PfamPF000971.7E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.519209267IPR001841Zinc finger, RING-type
SMARTSM001845.1E-8209266IPR001841Zinc finger, RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.732296325IPR000571Zinc finger, CCCH-type
SMARTSM003560.027296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSKRILCKFF IHGACLKGEY CEFSHDWQDQ PNNICTFYQK GVCSYGSRCR YDHVKVSHHQ  60
TSGPSPSNSH PHVTSDSHQA TRPSVVSLTR EYNPKLSTSI DVTSMSPLHT FCCTSAWTKK  120
IEADASLNNE SGPCPPDGRP ADLPICSFAA AGVCPRGEMC PHIHGNLCSI CGKHCLHPFR  180
SNEREDHIKM CHKNNMHLEA LKCSQEIECS VCLERVLSKP TAAERKFGVL SECDHPFCIS  240
CIRNWRSNSP ASGMDVNSAL RACPICRQLS YFVIPSVIWY STKEEKQAII DSYKTKLKSI  300
DCKYFDFGNG TCPFGTSCFY KHAYRDGRLE EVRLRHLDAE DGNTVIAKDI RLSDFLSGLY  360
L
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390642.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
RefseqXP_018679423.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotQ5ZA071e-173C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLM0SBK20.0M0SBK2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P03840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-150C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]