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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr3P01370_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 124aa MW: 14722 Da PI: 10.6159 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 1e-18 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ll+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl GSMUA_Achr3P01370_001 5 RGPWTLEEDKLLIHYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 52 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 58 | 101 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l++++++++G++ W++Ia++++ gRt++++k++w++ GSMUA_Achr3P01370_001 58 RGNLSPEEQLLILELHAKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 101 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.838 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-32 | 2 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-15 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.55E-11 | 7 | 52 | No hit | No description |
PROSITE profile | PS51294 | 25.757 | 53 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 58 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-25 | 60 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.88E-11 | 62 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MELRRGPWTL EEDKLLIHYI ACHGEGRWNL LARCSGLKRT GKSCRLRWLN YLKPDVKRGN 60 LSPEEQLLIL ELHAKWGNRW SRIAQHLPGR TDNEIKNYWR TRVQKQARQL KPPITSSFHC 120 QIDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 2 | 107 | 4 | 108 | B-MYB |
1h8a_C | 2e-26 | 2 | 107 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390937.1 | 1e-76 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | Q9C9G7 | 2e-64 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | M0SAV5 | 3e-86 | M0SAV5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr3P01370_001 | 4e-87 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 7e-67 | myb domain protein 62 |
Publications ? help Back to Top | |||
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