PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P00320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 195aa    MW: 21263.7 Da    PI: 5.1091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P00320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-173483255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr++  +g+WvAeIr+p   + r +r +lg+f +  eAa+a+++a+++l+g
  GSMUA_Achr3P00320_001 34 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSSSLEAAQAYDNAARSLYG 83
                           69****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.61E-263393No hitNo description
SuperFamilySSF541712.29E-193492IPR016177DNA-binding domain
PfamPF008474.0E-123483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-283492IPR001471AP2/ERF domain
SMARTSM003805.7E-303497IPR001471AP2/ERF domain
PROSITE profilePS5103220.63491IPR001471AP2/ERF domain
PRINTSPR003673.7E-93546IPR001471AP2/ERF domain
PRINTSPR003673.7E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGPEEKKQKK CCPLRRSRKG CMKGKGGPEN QACTYRGVRQ RTWGKWVAEI REPNRGARLW  60
LGTFSSSLEA AQAYDNAARS LYGDCARLNL SDDSGPRRPS VKSEASCSPT CSTETSTSES  120
RATFPGSVQS PAGYFCGGGG GLDDFDDYVT GLPKAEDFGL EAFSDIPLFD DVGFAETMFD  180
KELLSFDAMQ LSWCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-143590359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-1435901571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391184.11e-142PREDICTED: dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA13e-59DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLM0SAK01e-141M0SAK0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P00320_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-39ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]