PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 383aa    MW: 42574 Da    PI: 9.2477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-057092123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C++C++ F r  nL+ H r+H
  GSMUA_Achr2P21680_001 70 YVCEICHQGFQRDQNLQMHRRRH 92
                           9*********************9 PP
2zf-C2H214.30.00012148169223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C+ C+k +  +s++k H++t+
  GSMUA_Achr2P21680_001 148 ACSRCSKAYAVQSDYKAHLKTC 169
                            6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.43E-56793No hitNo description
Gene3DG3DSA:3.30.160.601.2E-46992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0247092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6587092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355120111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4138168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110147174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLRSSPQQAV SALPVNSVSC STASNPPRTP ISSADDDKAG KRKRRPAGTP DPDAEVVSLS  60
PRTLLESDRY VCEICHQGFQ RDQNLQMHRR RHKVPWKLLR RDAAEARKRV FVCPEPSCLH  120
HDPRHALGDL VGIKKHFRRK HSDRRQWACS RCSKAYAVQS DYKAHLKTCG TRGHSCDCGR  180
VFSRWVHRTL VYYIHGLCTA HGSQCYYHSI GWFHVVVESF IEHQDSCSAT RTFGEPATPR  240
PSSLSWTTSS TSPSTEPTLS GRTTSTAAAA AAAAAAASSL PLALHMAEKE LANAKTIRRQ  300
AQAELENAYL LRDHTAKQIN LMLLQITCHS CRKQLQSKPG TVWEEGPKAA ASYAPSAMAE  360
SKEDDSNDGS HFRSMNRIED VCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-13145184544Zinc finger protein JACKDAW
5b3h_F7e-13145184544Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067961e-139AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195951e-139AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
GenBankAP0045851e-139AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBankAP0064611e-139AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0149641e-139AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390340.10.0PREDICTED: protein indeterminate-domain 16
SwissprotF4IPE31e-101IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLM0SA090.0M0SA09_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21680_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.12e-98C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]