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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P21670_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 220aa MW: 24155.9 Da PI: 10.6954 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 25.4 | 3.8e-08 | 1 | 50 | 1 | 51 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekka 51 mdddg rn+gyyep k nlgl+lmss+ er+ak+ +n +++++ GSMUA_Achr2P21670_001 1 MDDDGGLGiRNWGYYEPP--SKGNLGLRLMSSVVERNAKPLLSNGGFIHRHC 50 999999999*******99..799****************9877777776665 PP | |||||||
2 | GAGA_bind | 269.6 | 1.7e-82 | 61 | 220 | 140 | 301 |
GAGA_bind 140 aaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227 + ++ k+++ kkr r+ +k++k k++kk + ++ ++v + s+ +r ka +ks+++ +ng+++D+s++P+PvCsCtG+++ CY+WG GSMUA_Achr2P21670_001 61 EDTTGKNEPPLKKRPRGCLQKSSKPKRPKKVT-APSDEVPNGSV-SRGKAARKSTGMIINGIDFDISRIPTPVCSCTGKPQPCYRWGV 146 34455666677888899999999999**9955.55566666654.79***************************************** PP GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DL+++WAkHGtnkfvtir GSMUA_Achr2P21670_001 147 GGWQSACCTTNMSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLRTFWAKHGTNKFVTIR 220 *************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 2.1E-8 | 1 | 44 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.4E-119 | 1 | 220 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 7.9E-83 | 59 | 220 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDDDGGLGIR NWGYYEPPSK GNLGLRLMSS VVERNAKPLL SNGGFIHRHC SFPEPSVLMA 60 EDTTGKNEPP LKKRPRGCLQ KSSKPKRPKK VTAPSDEVPN GSVSRGKAAR KSTGMIINGI 120 DFDISRIPTP VCSCTGKPQP CYRWGVGGWQ SACCTTNMSM YPLPMSTKRR GARIAGRKMS 180 QGAFKKVLEK LAGEGYNLSN PIDLRTFWAK HGTNKFVTIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 90 | PKRPKKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390341.1 | 1e-137 | PREDICTED: protein Barley B recombinant-like | ||||
Refseq | XP_009390343.1 | 1e-137 | PREDICTED: protein Barley B recombinant-like | ||||
Swissprot | P0DH88 | 7e-75 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 7e-75 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | M0SA08 | 1e-162 | M0SA08_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P21670_001 | 1e-162 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01930.2 | 2e-74 | basic pentacysteine1 |
Publications ? help Back to Top | |||
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