PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P21460_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 387aa MW: 43022 Da PI: 8.522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P21460_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +K Ka +L + ++Y++sLq GSMUA_Achr2P21460_001 165 SHSLAERARREKISERMKMLQGLVPGC-----EKvTGKALMLDEIINYVQSLQ 212 8***********************9.....67699*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-16	159	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-9	159	216	No hit	No description
PROSITE profile	PS50888	15.205	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	161	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-6	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-9	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAFSYQEQHP FLLDSPYFPR SPAEMLLVPQ QGGEMANNAS SSSCFPYPYP YPSEASPVAP 60 ATDAGAYGTS APSVDSHTVC SPVASETHDV ENKRKSRDEA SLMITGELKN TKEGEIKKQR 120 RLRGGQKKTE EKKPKPNDSK GSKACLDTTG GYVHVRARRG QATDSHSLAE RARREKISER 180 MKMLQGLVPG CEKVTGKALM LDEIINYVQS LQNQVEFLSM KIASLSPILY GFNVDFGDCI 240 DQPQGLSTCA LSSRDLYVAP AVSLVRQQLM QVQHRSTLIV HIACSCPCGS VSSLQNCTEQ 300 RNLQPKKNKE KGQRQEDRER ADPCCWLLDH RVEFAYVLST VKEFYFVFTA ILVPRGCSYR 360 SLPSSSFASI LLRGRVMSCH SLKQIEH

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAFSYQEQHP FLLDSPYFPR SPAEMLLVPQ QGGEMANNAS SSSCFPYPYP YPSEASPVAP  60
ATDAGAYGTS APSVDSHTVC SPVASETHDV ENKRKSRDEA SLMITGELKN TKEGEIKKQR  120
RLRGGQKKTE EKKPKPNDSK GSKACLDTTG GYVHVRARRG QATDSHSLAE RARREKISER  180
MKMLQGLVPG CEKVTGKALM LDEIINYVQS LQNQVEFLSM KIASLSPILY GFNVDFGDCI  240
DQPQGLSTCA LSSRDLYVAP AVSLVRQQLM QVQHRSTLIV HIACSCPCGS VSSLQNCTEQ  300
RNLQPKKNKE KGQRQEDRER ADPCCWLLDH RVEFAYVLST VKEFYFVFTA ILVPRGCSYR  360
SLPSSSFASI LLRGRVMSCH SLKQIEH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018676630.1	0.0	PREDICTED: transcription factor bHLH137-like isoform X2
TrEMBL	M0S9Y7	0.0	M0S9Y7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P21460_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-44	bHLH family protein