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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P20280_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22084.5 Da PI: 4.631 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1.1e-16 | 50 | 101 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr ++ grWv+e+r+p++ + r++lg+fg +e+Aa a++aa+ l+ge GSMUA_Achr2P20280_001 50 PVYHGVR-ERNGGRWVCEVREPRK---KSRIWLGTFGEPEMAALAHDAAAITLRGE 101 689***9.7779******999843...6*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-12 | 50 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-28 | 51 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-26 | 51 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-19 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.297 | 51 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 52 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.31E-16 | 52 | 110 | No hit | No description |
PRINTS | PR00367 | 1.9E-9 | 90 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEFEESSSSS SPPSSSSYSC CSSTSTASGT PITSGKRKAG RKKFRETRHP VYHGVRERNG 60 GRWVCEVREP RKKSRIWLGT FGEPEMAALA HDAAAITLRG ESALLNFPDL AGTLPRARSP 120 APEDVRRAAT EAENTATEDA AAPSAAVFVD EDELFNMPEL IEDMARGMLL TPPALQRRGF 180 DWDIAVEEEQ EIDLSPLWND E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-13 | 52 | 108 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-13 | 52 | 108 | 6 | 63 | ATERF1 |
3gcc_A | 5e-13 | 52 | 108 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009390140.1 | 1e-113 | PREDICTED: dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | A2WZI4 | 5e-57 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 5e-57 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | M0S9L9 | 1e-144 | M0S9L9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P20280_001 | 1e-145 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 5e-37 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
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