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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P18480_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 26910 Da PI: 8.6679 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C ++F++ L H+r+H GSMUA_Achr2P18480_001 4 HKCRICFRRFPSGRALGGHMRSH 26 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-6 | 3 | 26 | No hit | No description |
Pfam | PF13912 | 1.2E-7 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.808 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.051 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-6 | 164 | 191 | No hit | No description |
Pfam | PF13912 | 2.7E-11 | 168 | 192 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 169 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 171 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEKHKCRICF RRFPSGRALG GHMRSHGKLT EQASCGLRVK GRKRSRLEDP ESSSAFAAVG 60 STYAVVEDGE SETDANHRCR SKRARHAYSR PEPASSASDV TTEEDVALCL MMLSRDSWIS 120 GDVEEGNVRR ITSRSRPPRR RRSRFQCGKC KKRTDGDDDF EADADAKVFE CPFCLRVFAS 180 GQALGGHKRS HLTSSAATTM TTTSDHAKFN RALGVIDLNL PAPADDDVAL SAASDTEFIV 240 NHTAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 82 | RCRSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389680.1 | 1e-136 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | M0S939 | 1e-179 | M0S939_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P18480_001 | 1e-180 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11214 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-28 | C2H2-like zinc finger protein |