PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P17160_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 301aa MW: 33820 Da PI: 6.6943

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P17160_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.4	5.8e-39	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C +apyfp +q +f +vh++FGas++ ++l +l++ +r+da+++lvyeAear+r+PvyG++g i lqq+le GSMUA_Achr2P17160_001 6 PCGACKFLRRKCTPNCLFAPYFPTDQVTNFVYVHRMFGASKLARMLGDLNPAQRQDAVNTLVYEAEARLREPVYGCAGYICLLQQRLE 93 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 + ++el +++e GSMUA_Achr2P17160_001 94 RIQNELYNVEKE 105 ***9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.161	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-39	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSSNAPCGAC KFLRRKCTPN CLFAPYFPTD QVTNFVYVHR MFGASKLARM LGDLNPAQRQ 60 DAVNTLVYEA EARLREPVYG CAGYICLLQQ RLERIQNELY NVEKELATYI DPAAFDPFLP 120 PLHHQHQDQH GHHHRQGFYP SSTATYGVLG MGTIAGLGVA APGTSHYPQI LIPEQAQQQQ 180 PQPPRIVEAQ QMAMAALAAA REQDMLRSFE QQQELAKFNS EFLDSGQGYN KIDYGTMVSA 240 MPAGSSCELP LVPAQPFELS FAVHPQHYPE QQPQQQQQWQ TQTQHQRAQS HYGRSDIGPS 300 Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	3	109	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	3	109	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389708.1	0.0	PREDICTED: LOB domain-containing protein 36-like
TrEMBL	M0S8Q7	0.0	M0S8Q7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P17160_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-49	ASYMMETRIC LEAVES 2-like 1