PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P17130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 316aa    MW: 33732.5 Da    PI: 4.6103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P17130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-112422821055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  GSMUA_Achr2P17130_001 242 RKRRERINEKLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 282
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14232298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.186232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-13237292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-12241286No hitNo description
PfamPF000103.3E-8242282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEPGVAAQEA RWSSFGAEDS EIMAQLLGPF SCTNEQAVKD LSFGLSSMSW SSDHAADSYD  60
SSEPNAAPAI NTSSASAFTA YCTVGDQLIT PSLRLIPNPS FGDPTNANEE TSSDDAGDSS  120
FILSEPVPGM TLPKRKLNTY EDDSPDDVSK KKAKAGANVS VNAKKAQSKR PQKTTKSSDD  180
EDKMNNTAAN GRSSCSCLSE DDSLADLNGG GTTTSGSPAL ILAGKARAGR GSATDPQSLY  240
ARKRRERINE KLKILQNLVP NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DELWMYAPIA  300
YNGMNIGLDL KISPPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389710.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLM0S8Q40.0M0S8Q4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P17130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-56bHLH family protein